PH01001181G0290's details annotation
1.Annotation
ICBR annotation: ACT domain containing protein, expressed
Blast result AT3G56220 : 5.50E-23
Blast annotation: transcription regulators
2.Location
Scaffold: PH01001181
Strand: -
| Region | Start | End |
| gene | 174514 | 177881 |
| mRNA | 174514 | 177881 |
| exon | 174514 | 175917 |
| exon | 176012 | 176215 |
| exon | 176354 | 176485 |
| exon | 177713 | 177881 |
| CDS | 175798 | 175917 |
| CDS | 176012 | 176215 |
| CDS | 176354 | 176485 |
| CDS | 177713 | 177790 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000047 | isomerase activity, Brassinosteroid_biosynthesis carbohydrate metabolic process, carbohydrate binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.