PH01001181G0490's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2c, putative, expressed
Blast result AT1G79630 : 4.30E-88
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01001181
Strand: -
| Region | Start | End |
| gene | 304590 | 308128 |
| mRNA | 304590 | 308128 |
| exon | 304590 | 305360 |
| exon | 306115 | 306546 |
| exon | 306770 | 307111 |
| exon | 307606 | 308128 |
| CDS | 304959 | 305360 |
| CDS | 306115 | 306546 |
| CDS | 306770 | 307111 |
| CDS | 307606 | 307764 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 33 | 208 |
| PF00481.20 | PP2C | 238 | 344 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.