PH01001191G0170's details annotation
1.Annotation
ICBR annotation: cyclic nucleotide-gated ion channel, putative, expressed
Blast result AT4G30360 : 7.00E-168
Blast annotation: cyclic nucleotide-gated channel 17
2.Location
Scaffold: PH01001191
Strand: +
| Region | Start | End |
| gene | 80442 | 84765 |
| mRNA | 80442 | 84765 |
| exon | 80442 | 81132 |
| exon | 81536 | 81831 |
| exon | 82035 | 82146 |
| exon | 82463 | 82699 |
| exon | 82898 | 83556 |
| exon | 84148 | 84765 |
| CDS | 80938 | 81132 |
| CDS | 81536 | 81831 |
| CDS | 82035 | 82146 |
| CDS | 82463 | 82699 |
| CDS | 82898 | 83556 |
| CDS | 84148 | 84745 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00520.30 | Ion_trans | 20 | 210 |
| PF00027.28 | cNMP_binding | 305 | 393 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.