Annotation of co-expression genes

PH01001192G0030's details annotation

1.Annotation

ICBR annotation: plasma membrane ATPase, putative, expressed

Blast result AT4G30190 : 0
Blast annotation: H(+)-ATPase 2

2.Location

Scaffold: PH01001192
Strand: +

RegionStartEnd
gene2404529843
mRNA2404529843
exon2404524263
exon2484024959
exon2510726234
exon2634526386
exon2657326717
exon2681926983
exon2709627334
exon2743527467
exon2755427635
exon2773627896
exon2804428109
exon2832828510
exon2857528756
exon2889429843
CDS2421024263
CDS2484024959
CDS2510726234
CDS2634526386
CDS2657326717
CDS2681926983
CDS2709627334
CDS2743527467
CDS2755427635
CDS2773627896
CDS2804428109
CDS2832828510
CDS2857528756
CDS2889428990

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00690.25Cation_ATPase_N2083
PF00122.19E1-E2_ATPase132312
PF00702.25Hydrolase328585

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0006200ATP catabolic process
GO:0006754ATP biosynthetic process
GO:0006812cation transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0019829cation-transporting ATPase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.