PH01001195G0550's details annotation
1.Annotation
ICBR annotation: ethylene-responsive protein related, putative, expressed
Blast result AT1G31050 : 3.90E-37
Blast annotation: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
2.Location
Scaffold: PH01001195
Strand: -
| Region | Start | End |
| gene | 340046 | 348597 |
| mRNA | 340046 | 348597 |
| exon | 340046 | 340289 |
| exon | 340768 | 340824 |
| exon | 341915 | 341980 |
| exon | 342701 | 342766 |
| exon | 343210 | 343239 |
| exon | 343530 | 343664 |
| exon | 343765 | 344564 |
| exon | 347275 | 347410 |
| exon | 348062 | 348597 |
| CDS | 340119 | 340289 |
| CDS | 340768 | 340824 |
| CDS | 341915 | 341980 |
| CDS | 342701 | 342766 |
| CDS | 343210 | 343239 |
| CDS | 343530 | 343664 |
| CDS | 343765 | 344564 |
| CDS | 347275 | 347410 |
| CDS | 348062 | 348262 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001237 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.