Annotation of co-expression genes

PH01001201G0080's details annotation

1.Annotation

ICBR annotation: serine/threonine-protein kinase, putative, expressed

Blast result AT4G01330 : 3.00E-154
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01001201
Strand: -

RegionStartEnd
gene5834466145
mRNA5834466145
exon5834458688
exon5893759250
exon5944659757
exon5979959944
exon6038160552
exon6068860749
exon6276862852
exon6315663365
exon6345163580
exon6368263852
exon6394864070
exon6418664290
exon6437166145
CDS5849658688
CDS5893759250
CDS5944659757
CDS5979959944
CDS6038160552
CDS6068860749
CDS6276862852
CDS6315663365
CDS6345163580
CDS6368263852
CDS6394864070
CDS6418664290
CDS6437165032

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase190456

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.