Annotation of co-expression genes

PH01001201G0480's details annotation

1.Annotation

ICBR annotation: Yip1 domain containing protein, expressed

Blast result AT2G18840 : 9.90E-99
Blast annotation: Integral membrane Yip1 family protein

2.Location

Scaffold: PH01001201
Strand: -

RegionStartEnd
gene311112314845
mRNA311112314845
exon311112311552
exon311681311755
exon314194314845
CDS311292311552
CDS311681311755
CDS314194314697

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000108CMGC_CDK-CRK7-CDK9 (from iTAK)
Peroxisome
myosin complex,
microtubule associated complex,
coexpression networkCFinderM001365HSF Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
GT47 GlycosylTransferases
coexpression networkCFinderM001733nucleotide-sugar transport,
carbohydrate transport,
nucleotide-sugar transmembrane transporter activity,
Golgi membrane,
sugar:hydrogen symporter activity,
metallopeptidase activity,
NAC Transcription_Regulator(from PlantTFDB)
metalloendopeptidase activity,
coexpression networkCFinderM001734NAC Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04893.16Yip1129260

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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