PH01001201G0580's details annotation
1.Annotation
ICBR annotation: OsFBT7 - F-box and tubby domain containing protein, expressed
Blast result AT1G76900 : 1.00E-159
Blast annotation: tubby like protein 1
2.Location
Scaffold: PH01001201
Strand: -
| Region | Start | End |
| gene | 372152 | 374923 |
| mRNA | 372152 | 374923 |
| exon | 372152 | 373554 |
| exon | 373655 | 373787 |
| exon | 374066 | 374153 |
| exon | 374317 | 374923 |
| CDS | 372804 | 373554 |
| CDS | 373655 | 373787 |
| CDS | 374066 | 374153 |
| CDS | 374317 | 374682 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 58 | 111 |
| PF01167.17 | Tub | 122 | 440 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.