PH01001202G0290's details annotation
1.Annotation
ICBR annotation: splicing factor, putative, expressed
Blast result AT3G22430 : 5.40E-27
Blast annotation: -
2.Location
Scaffold: PH01001202
Strand: -
| Region | Start | End |
| gene | 208773 | 216348 |
| mRNA | 208773 | 216348 |
| exon | 208773 | 209134 |
| exon | 209502 | 209812 |
| exon | 211493 | 211605 |
| exon | 211994 | 212063 |
| exon | 212364 | 214744 |
| exon | 215035 | 215087 |
| exon | 215952 | 216348 |
| CDS | 208788 | 209134 |
| CDS | 209502 | 209812 |
| CDS | 211493 | 211605 |
| CDS | 211994 | 212063 |
| CDS | 212364 | 214744 |
| CDS | 215035 | 215087 |
| CDS | 215952 | 216024 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000665 | |
| coexpression network | CFinderM001094 | Ribosome translation, protein methylation, structural constituent of ribosome, intracellular, methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03468.13 | XS | 963 | 1084 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.