Gene details

Annotation of co-expression genes

PH01001204G0070's details annotation

1.Annotation

ICBR annotation: LIG1 - Putative DNA ligase I, expressed

Blast result AT1G08130 : 0.00E+00
Blast annotation: DNA ligase 1

2.Location

Scaffold: PH01001204
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001592	DNA_ligation_involved_in_DNA_repair DNA_ligase_activity DNA ligase (ATP) activity, regulation_of_cell_cycle DNA recombination, C3H Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity Mismatch_repair Base_excision_repair Nucleotide_excision_repair DNA_replication DNA binding,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

10.Gene Ontology

GO Accession	GO Annotation
GO:0003677	DNA binding
GO:0003909	DNA ligase activity
GO:0003910	DNA ligase (ATP) activity
GO:0005524	ATP binding
GO:0006260	DNA replication
GO:0006281	DNA repair
GO:0006310	DNA recombination
GO:0051103	DNA ligation involved in DNA repair

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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