PH01001206G0320's details annotation
1.Annotation
ICBR annotation: Homeobox domain containing protein, expressed
Blast result AT4G08150 : 2.50E-84
Blast annotation: KNOTTED-like from Arabidopsis thaliana
2.Location
Scaffold: PH01001206
Strand: +
| Region | Start | End |
| gene | 222198 | 226119 |
| mRNA | 222198 | 226119 |
| exon | 222198 | 223841 |
| exon | 223923 | 224048 |
| exon | 224167 | 224275 |
| exon | 224955 | 224986 |
| exon | 225403 | 226119 |
| CDS | 223527 | 223841 |
| CDS | 223923 | 224048 |
| CDS | 224167 | 224275 |
| CDS | 224955 | 224986 |
| CDS | 225403 | 225417 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000191 | TALE Transcription_Regulator(from PlantTFDB) HB-KNOX Transcription_Regulator(from iTAK) regulation of transcription, DNA-dependent, HB-BELL Transcription_Regulator(from iTAK) protein complex, nucleus, microtubule, AUX/IAA Transcription_Regulator(from iTAK) Phagosome selenium binding, sequence-specific DNA binding, structural constituent of cytoskeleton, sequence-specific DNA binding transcription factor activity, trehalose biosynthetic process, microtubule-based process, protein polymerization, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-KNOX |
| Transcription_Regulator(from PlantTFDB) | TALE |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03790.12 | KNOX1 | 82 | 123 |
| PF03791.12 | KNOX2 | 139 | 183 |
| PF03789.12 | ELK | 213 | 234 |
| PF05920.10 | Homeobox_KN | 253 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.