Annotation of co-expression genes

PH01001210G0500's details annotation

1.Annotation

ICBR annotation: myosin head family protein, expressed

Blast result AT5G20490 : 0
Blast annotation: Myosin family protein with Dil domain

2.Location

Scaffold: PH01001210
Strand: +

RegionStartEnd
gene312977341682
mRNA312977341682
exon312977313180
exon313315313424
exon313542313667
exon314549314692
exon314783314928
exon315075315189
exon315332315390
exon316120316279
exon316381316530
exon316620316756
exon316861317007
exon317090317191
exon317289317346
exon317429317530
exon318206318243
exon318590318716
exon318797318964
exon320652320783
exon320873320982
exon321051321159
exon322645322822
exon323037323125
exon323485323583
exon323759323947
exon324189324328
exon325331325489
exon325651325818
exon325914326150
exon326337326504
exon328839329315
exon329420329520
exon330938331198
exon331513331592
exon332138332306
exon334250334316
exon334450334617
exon335110335277
exon335398335565
exon335742335909
exon336091336258
exon336371336538
exon336723336890
exon337044337253
exon337345337462
exon337549337641
exon337906338067
exon339171339251
exon339924340265
exon340357340488
exon340882340938
exon341046341102
exon341172341252
exon341345341427
exon341522341682
CDS313036313180
CDS313315313424
CDS313542313667
CDS314549314692
CDS314783314928
CDS315075315189
CDS315332315390
CDS316120316279
CDS316381316530
CDS316620316756
CDS316861317007
CDS317090317191
CDS317289317346
CDS317429317530
CDS318206318243
CDS318590318716
CDS318797318964
CDS320652320783
CDS320873320982
CDS321051321159
CDS322645322822
CDS323037323125
CDS323485323583
CDS323759323947
CDS324189324328
CDS325331325489
CDS325651325818
CDS325914326150
CDS326337326504
CDS328839329315
CDS329420329520
CDS330938331198
CDS331513331592
CDS332138332306
CDS334250334316
CDS334450334617
CDS335110335277
CDS335398335565
CDS335742335909
CDS336091336258
CDS336371336538
CDS336723336890
CDS337044337253
CDS337345337462
CDS337549337641
CDS337906338067
CDS339171339251
CDS339924340265
CDS340357340488
CDS340882340938
CDS341046341102
CDS341172341252
CDS341345341427
CDS341522341645

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00063.20Myosin_head147804
PF01843.18DIL24252482

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003774motor activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0016459myosin complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.