PH01001210G0520's details annotation
1.Annotation
ICBR annotation: ribosomal RNA assembly protein mis3, putative, expressed
Blast result AT5G08420 : 2.00E-100
Blast annotation: RNA-binding KH domain-containing protein
2.Location
Scaffold: PH01001210
Strand: -
| Region | Start | End |
| gene | 344871 | 350169 |
| mRNA | 344871 | 350169 |
| exon | 344871 | 345671 |
| exon | 345799 | 345879 |
| exon | 345960 | 346103 |
| exon | 346410 | 346491 |
| exon | 346584 | 346666 |
| exon | 347108 | 347164 |
| exon | 348313 | 348369 |
| exon | 349093 | 349161 |
| exon | 349403 | 349513 |
| exon | 349858 | 350169 |
| CDS | 345552 | 345671 |
| CDS | 345799 | 345879 |
| CDS | 345960 | 346103 |
| CDS | 346410 | 346491 |
| CDS | 346584 | 346666 |
| CDS | 347108 | 347164 |
| CDS | 348313 | 348369 |
| CDS | 349093 | 349161 |
| CDS | 349403 | 349513 |
| CDS | 349858 | 350022 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000433 | Ribosome_biogenesis_in_eukaryotes ATP-dependent helicase activity, threonine-tRNA ligase activity, helicase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.