PH01001213G0380's details annotation
1.Annotation
ICBR annotation: lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
Blast result AT4G12840 : 2.00E-113
Blast annotation: Protein of unknown function (DUF707)
2.Location
Scaffold: PH01001213
Strand: -
| Region | Start | End |
| gene | 226734 | 233059 |
| mRNA | 226734 | 233059 |
| exon | 226734 | 227771 |
| exon | 228327 | 228392 |
| exon | 228483 | 228817 |
| exon | 228958 | 229143 |
| exon | 229278 | 229400 |
| exon | 229500 | 229619 |
| exon | 230625 | 233059 |
| CDS | 227408 | 227771 |
| CDS | 228327 | 228392 |
| CDS | 228483 | 228817 |
| CDS | 228958 | 229143 |
| CDS | 229278 | 229400 |
| CDS | 229500 | 229619 |
| CDS | 230625 | 230627 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05212.11 | DUF707 | 84 | 381 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.