PH01001214G0260's details annotation
1.Annotation
ICBR annotation: nucleolin, putative, expressed
Blast result AT3G18610 : 5.70E-59
Blast annotation: nucleolin like 2
2.Location
Scaffold: PH01001214
Strand: -
| Region | Start | End |
| gene | 150875 | 157159 |
| mRNA | 150875 | 157159 |
| exon | 150875 | 150979 |
| exon | 152013 | 152317 |
| exon | 152492 | 152583 |
| exon | 152656 | 152746 |
| exon | 152873 | 152961 |
| exon | 153119 | 153236 |
| exon | 153314 | 153405 |
| exon | 153670 | 153759 |
| exon | 153866 | 154009 |
| exon | 154087 | 154179 |
| exon | 154268 | 154327 |
| exon | 154406 | 154522 |
| exon | 154706 | 154807 |
| exon | 155796 | 155867 |
| exon | 156165 | 156340 |
| exon | 156433 | 157159 |
| CDS | 150906 | 150979 |
| CDS | 152013 | 152317 |
| CDS | 152492 | 152583 |
| CDS | 152656 | 152746 |
| CDS | 152873 | 152961 |
| CDS | 153119 | 153236 |
| CDS | 153314 | 153405 |
| CDS | 153670 | 153759 |
| CDS | 153866 | 154009 |
| CDS | 154087 | 154179 |
| CDS | 154268 | 154327 |
| CDS | 154406 | 154522 |
| CDS | 154706 | 154807 |
| CDS | 155796 | 155867 |
| CDS | 156165 | 156340 |
| CDS | 156433 | 156514 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 329 | 397 |
| PF00076.21 | RRM_1 | 430 | 501 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.