PH01001215G0530's details annotation
1.Annotation
ICBR annotation: AT-GTL1, putative, expressed
Blast result AT1G33240 : 7.80E-61
Blast annotation: GT-2-like 1
2.Location
Scaffold: PH01001215
Strand: +
| Region | Start | End |
| gene | 388790 | 394765 |
| mRNA | 388790 | 394765 |
| exon | 388790 | 389933 |
| exon | 390304 | 390318 |
| exon | 390573 | 390743 |
| exon | 390908 | 392087 |
| exon | 392173 | 392342 |
| exon | 393594 | 394765 |
| CDS | 389875 | 389933 |
| CDS | 390304 | 390318 |
| CDS | 390573 | 390743 |
| CDS | 390908 | 392087 |
| CDS | 392173 | 392342 |
| CDS | 393594 | 393693 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Trihelix |
| Transcription_Regulator(from PlantTFDB) | Trihelix |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13837.5 | Myb_DNA-bind_4 | 4 | 71 |
| PF13837.5 | Myb_DNA-bind_4 | 289 | 376 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.