PH01001218G0060's details annotation
1.Annotation
ICBR annotation: integral membrane transporter family protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001218
Strand: -
| Region | Start | End |
| gene | 45471 | 49040 |
| mRNA | 45471 | 49040 |
| exon | 45471 | 46337 |
| exon | 48166 | 49040 |
| CDS | 46161 | 46337 |
| CDS | 48166 | 48489 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000729 | positive_regulation_of_transcription,_DNA-templated GATA Transcription_Regulator(from PlantTFDB) C2C2-GATA Transcription_Regulator(from iTAK) TKL_CTR1-DRK-2 (from iTAK) mRNA_surveillance_pathway |
| coexpression network | CFinderM001785 | transferase activity, transferring pentosyl groups, Nicotinate_and_nicotinamide_metabolism Diterpenoid_biosynthesis |
| coexpression network | CFinderM001870 | Basal_transcription_factors SNF2 Transcription_Regulator(from iTAK) transferase activity, transferring pentosyl groups, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.