Annotation of co-expression genes

PH01001220G0630's details annotation

1.Annotation

ICBR annotation: glycosyl transferase 8 domain containing protein, putative, expressed

Blast result AT3G01040 : 0.00E+00
Blast annotation: galacturonosyltransferase 13

2.Location

Scaffold: PH01001220
Strand: +

RegionStartEnd
gene373407379800
mRNA373407379800
exon373407374322
exon376585376643
exon376732376887
exon377095377682
exon378100378402
exon379489379800
CDS374112374322
CDS376585376643
CDS376732376887
CDS377095377682
CDS378100378402
CDS379489379779

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001081proteasome complex,
regulation of protein catabolic process,
enzyme regulator activity,
Rcd1-like Transcription_Regulator(from iTAK)
Proteasome
binding,
transcription factor TFIID complex,
glycyl-tRNA aminoacylation,
RLK-Pelle_LRR-XII-1 (from iTAK)
glycine-tRNA ligase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01501.19Glyco_transf_8174505

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismalpha-1,4-galacturonosyltransferase [EC:2.4.1.43]ko00500K13648
Amino sugar and nucleotide sugar metabolismalpha-1,4-galacturonosyltransferase [EC:2.4.1.43]ko00520K13648

10.Gene Ontology

GO AccessionGO Annotation
GO:0016757transferase activity, transferring glycosyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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