PH01001224G0180's details annotation
1.Annotation
ICBR annotation: TBC domain containing protein, expressed
Blast result AT3G07890 : 3.00E-161
Blast annotation: Ypt/Rab-GAP domain of gyp1p superfamily protein
2.Location
Scaffold: PH01001224
Strand: -
| Region | Start | End |
| gene | 114702 | 119740 |
| mRNA | 114702 | 119740 |
| exon | 114702 | 115858 |
| exon | 116087 | 116188 |
| exon | 116321 | 116398 |
| exon | 116505 | 116598 |
| exon | 116705 | 116841 |
| exon | 116964 | 117080 |
| exon | 117700 | 118254 |
| exon | 118477 | 118591 |
| exon | 118870 | 119740 |
| CDS | 115727 | 115858 |
| CDS | 116087 | 116188 |
| CDS | 116321 | 116398 |
| CDS | 116505 | 116598 |
| CDS | 116705 | 116841 |
| CDS | 116964 | 117080 |
| CDS | 117700 | 118254 |
| CDS | 118477 | 118591 |
| CDS | 118870 | 118934 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00566.17 | RabGAP-TBC | 202 | 284 |
| PF00566.17 | RabGAP-TBC | 285 | 394 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005097 | Rab GTPase activator activity |
| GO:0005622 | intracellular |
| GO:0032313 | regulation of Rab GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.