Annotation of co-expression genes

PH01001227G0130's details annotation

1.Annotation

ICBR annotation: signal peptidase complex subunit 3, putative, expressed

Blast result AT5G27430 : 7.90E-74
Blast annotation: Signal peptidase subunit

2.Location

Scaffold: PH01001227
Strand: -

RegionStartEnd
gene8705190672
mRNA8705190672
exon8705187426
exon8917589228
exon8975189813
exon8990489951
exon9014090672
CDS8732287426
CDS8917589228
CDS8975189813
CDS8990489951
CDS9014090202

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04573.11SPC226163

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein exportsignal peptidase complex subunit 3 [EC:3.4.-.-]ko03060K12948

10.Gene Ontology

GO AccessionGO Annotation
GO:0005787signal peptidase complex
GO:0006465signal peptide processing
GO:0008233peptidase activity
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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