PH01001227G0160's details annotation
1.Annotation
ICBR annotation: octicosapeptide/Phox/Bem1p, putative, expressed
Blast result AT2G25290 : 5.00E-107
Blast annotation: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
2.Location
Scaffold: PH01001227
Strand: +
| Region | Start | End |
| gene | 108017 | 116188 |
| mRNA | 108017 | 116188 |
| exon | 108017 | 111900 |
| exon | 112514 | 112859 |
| exon | 114024 | 114976 |
| exon | 115518 | 116188 |
| CDS | 111285 | 111900 |
| CDS | 112514 | 112859 |
| CDS | 114024 | 114976 |
| CDS | 115518 | 115666 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000583 | RLK-Pelle_LRR-Xa (from iTAK) protein phosphorylation, RLK-Pelle_RLCK-IXb (from iTAK) STE_STE11 (from iTAK) ubiquitin ligase complex, Endocytosis transferase activity, transferring phosphorus-containing groups, protein kinase activity, protein ubiquitination, response to stress, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.