PH01001227G0240's details annotation
1.Annotation
ICBR annotation: ATXR, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001227
Strand: +
| Region | Start | End |
| gene | 166565 | 179536 |
| mRNA | 166565 | 179536 |
| exon | 166565 | 169409 |
| exon | 169510 | 169701 |
| exon | 170206 | 170294 |
| exon | 170400 | 170489 |
| exon | 173392 | 174106 |
| exon | 175502 | 176124 |
| exon | 178927 | 179536 |
| CDS | 168986 | 169409 |
| CDS | 169510 | 169701 |
| CDS | 170206 | 170294 |
| CDS | 170400 | 170489 |
| CDS | 173392 | 174106 |
| CDS | 175502 | 176124 |
| CDS | 178927 | 179370 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000645 | SET Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000671 | SET Transcription_Regulator(from iTAK) DNA repair, Base_excision_repair nuclease activity, Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16135.4 | Jas | 212 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.