PH01001227G0430's details annotation
1.Annotation
ICBR annotation: transmembrane 9 superfamily member, putative, expressed
Blast result AT5G10840 : 0.00E+00
Blast annotation: Endomembrane protein 70 protein family
2.Location
Scaffold: PH01001227
Strand: +
| Region | Start | End |
| gene | 279204 | 284053 |
| mRNA | 279204 | 284053 |
| exon | 279204 | 279831 |
| exon | 281433 | 281597 |
| exon | 281688 | 281797 |
| exon | 281871 | 281976 |
| exon | 282073 | 282185 |
| exon | 282279 | 282432 |
| exon | 282541 | 284053 |
| CDS | 279721 | 279831 |
| CDS | 281433 | 281597 |
| CDS | 281688 | 281797 |
| CDS | 281871 | 281976 |
| CDS | 282073 | 282185 |
| CDS | 282279 | 282432 |
| CDS | 282541 | 283698 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001584 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02990.15 | EMP70 | 56 | 594 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.