Annotation of co-expression genes

PH01001227G0460's details annotation

1.Annotation

ICBR annotation: protein phosphatase 2C, putative, expressed

Blast result AT4G31860 : 5.00E-109
Blast annotation: Protein phosphatase 2C family protein

2.Location

Scaffold: PH01001227
Strand: -

RegionStartEnd
gene292046296366
mRNA292046296366
exon292046292656
exon292745292868
exon292949293074
exon293829293982
exon294083294191
exon294505294568
exon294635294678
exon294992295055
exon295529295675
exon296136296366
CDS292547292656
CDS292745292868
CDS292949293074
CDS293829293982
CDS294083294191
CDS294505294568
CDS294635294678
CDS294992295055
CDS295529295675
CDS296136296201

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00481.20PP2C55107
PF00481.20PP2C115172
PF00481.20PP2C226326

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004722protein serine/threonine phosphatase activity
GO:0006470protein dephosphorylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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