PH01001233G0100's details annotation
1.Annotation
ICBR annotation: type II intron maturase protein, putative, expressed
Blast result AT5G46920 : 0.00E+00
Blast annotation: Intron maturase, type II family protein
2.Location
Scaffold: PH01001233
Strand: -
| Region | Start | End |
| gene | 61365 | 72818 |
| mRNA | 61365 | 72818 |
| exon | 61365 | 64910 |
| exon | 65840 | 65918 |
| exon | 66019 | 66365 |
| exon | 66483 | 66645 |
| exon | 66734 | 67017 |
| exon | 67099 | 67425 |
| exon | 69486 | 69653 |
| exon | 69744 | 69821 |
| exon | 70069 | 70158 |
| exon | 70242 | 70442 |
| exon | 70566 | 70658 |
| exon | 70705 | 70896 |
| exon | 71353 | 72818 |
| CDS | 63039 | 64910 |
| CDS | 65840 | 65918 |
| CDS | 66019 | 66365 |
| CDS | 66483 | 66645 |
| CDS | 66734 | 67017 |
| CDS | 67099 | 67425 |
| CDS | 69486 | 69653 |
| CDS | 69744 | 69821 |
| CDS | 70069 | 70158 |
| CDS | 70242 | 70442 |
| CDS | 70566 | 70658 |
| CDS | 70705 | 70896 |
| CDS | 71353 | 71535 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001488 | STAT Transcription_Regulator(from PlantTFDB) TKL-Pl-5 (from iTAK) Lysine_degradation nucleus, chloroplast, SET Transcription_Regulator(from iTAK) histone_methylation mRNA processing, histone_lysine_methylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | STAT |
| Transcription_Regulator(from PlantTFDB) | STAT |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01348.20 | Intron_maturas2 | 1115 | 1209 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0003723 | RNA binding |
| GO:0003964 | RNA-directed DNA polymerase activity |
| GO:0004871 | signal transducer activity |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0006278 | RNA-dependent DNA replication |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0006397 | mRNA processing |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.