PH01001235G0160's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G54970 : 1.60E-54
Blast annotation: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
2.Location
Scaffold: PH01001235
Strand: -
| Region | Start | End |
| gene | 89604 | 92999 |
| mRNA | 89604 | 92999 |
| exon | 89604 | 89828 |
| exon | 90450 | 90559 |
| exon | 90673 | 90758 |
| exon | 91107 | 91225 |
| exon | 91858 | 91975 |
| exon | 92252 | 92999 |
| CDS | 89784 | 89828 |
| CDS | 90450 | 90559 |
| CDS | 90673 | 90758 |
| CDS | 91107 | 91225 |
| CDS | 91858 | 91975 |
| CDS | 92252 | 92742 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000655 | cell communication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01063.18 | Aminotran_4 | 171 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.