PH01001236G0480's details annotation
1.Annotation
ICBR annotation: protein kinase APK1B, chloroplast precursor, putative, expressed
Blast result AT5G18610 : 3.00E-161
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01001236
Strand: +
| Region | Start | End |
| gene | 309502 | 313710 |
| mRNA | 309502 | 313710 |
| exon | 309502 | 309734 |
| exon | 310896 | 311092 |
| exon | 311271 | 311460 |
| exon | 311657 | 311713 |
| exon | 312106 | 312302 |
| exon | 312367 | 312480 |
| exon | 313008 | 313710 |
| CDS | 309614 | 309734 |
| CDS | 310896 | 311092 |
| CDS | 311271 | 311460 |
| CDS | 311657 | 311713 |
| CDS | 312106 | 312302 |
| CDS | 312367 | 312480 |
| CDS | 313008 | 313589 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 88 | 251 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.