Annotation of co-expression genes

PH01001237G0080's details annotation

1.Annotation

ICBR annotation: MRH1, putative, expressed

Blast result AT5G45840 : 2.00E-134
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01001237
Strand: +

RegionStartEnd
gene7285980841
mRNA7285980841
exon7285973739
exon7386873984
exon7434274615
exon7675776828
exon7695977102
exon7717877279
exon7737277436
exon7752678005
exon7831478504
exon7859178723
exon7880478961
exon7924879433
exon7951180841
CDS7361073739
CDS7386873984
CDS7434274615
CDS7675776828
CDS7695977102
CDS7717877279
CDS7737277436
CDS7752678005
CDS7831478504
CDS7859178723
CDS7880478961
CDS7924879433
CDS7951179771

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_24180
PF13855.5LRR_8194253
PF07714.16Pkinase_Tyr489738

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.