PH01001239G0290's details annotation
1.Annotation
ICBR annotation: ZOS9-20 - C2H2 zinc finger protein, expressed
Blast result AT2G36480 : 1.30E-45
Blast annotation: ENTH/VHS family protein
2.Location
Scaffold: PH01001239
Strand: -
| Region | Start | End |
| gene | 182536 | 188666 |
| mRNA | 182536 | 188666 |
| exon | 182536 | 184155 |
| exon | 184231 | 185076 |
| exon | 185326 | 185895 |
| exon | 186005 | 186130 |
| exon | 186351 | 186557 |
| exon | 186711 | 186812 |
| exon | 186851 | 186859 |
| exon | 187394 | 187536 |
| exon | 187999 | 188666 |
| CDS | 183247 | 184155 |
| CDS | 184231 | 185076 |
| CDS | 185326 | 185895 |
| CDS | 186005 | 186130 |
| CDS | 186351 | 186557 |
| CDS | 186711 | 186812 |
| CDS | 186851 | 186859 |
| CDS | 187394 | 187536 |
| CDS | 187999 | 188404 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000432 | TAZ Transcription_Regulator(from iTAK) transcription cofactor activity, histone acetyltransferase activity, threonine-type endopeptidase activity, endopeptidase activity, peptidyl-prolyl cis-trans isomerase activity, proteasome core complex, proteolysis involved in cellular protein catabolic process, Oxidative_phosphorylation Proteasome mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04818.12 | CTD_bind | 192 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | pre-mRNA cleavage complex 2 protein Pcf11 | ko03015 | K14400 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.