PH01001244G0140's details annotation
1.Annotation
ICBR annotation: 5-oxoprolinase, putative, expressed
Blast result AT5G37830 : 8.00E-112
Blast annotation: oxoprolinase 1
2.Location
Scaffold: PH01001244
Strand: +
| Region | Start | End |
| gene | 110238 | 112218 |
| mRNA | 110238 | 112218 |
| exon | 110238 | 110741 |
| exon | 110772 | 111001 |
| exon | 111216 | 112218 |
| CDS | 110603 | 110741 |
| CDS | 110772 | 111001 |
| CDS | 111216 | 111995 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02538.13 | Hydantoinase_B | 1 | 124 |
| PF02538.13 | Hydantoinase_B | 130 | 360 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Arginine and proline metabolism | N-methylhydantoinase B [EC:3.5.2.14] | ko00330 | K01474 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.