Annotation of co-expression genes

PH01001244G0440's details annotation

1.Annotation

ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed

Blast result AT5G56130 : 3.00E-124
Blast annotation: Transducin/WD40 repeat-like superfamily protein

2.Location

Scaffold: PH01001244
Strand: +

RegionStartEnd
gene313729320764
mRNA313729320764
exon313729314161
exon314929315024
exon316190316337
exon316686316774
exon317405317473
exon318083318140
exon318307318409
exon319079319129
exon319854319932
exon320021320153
exon320348320764
CDS314048314161
CDS314929315024
CDS316190316337
CDS316686316774
CDS317405317473
CDS318083318140
CDS318307318409
CDS319079319129
CDS319854319932
CDS320021320153
CDS320348320382

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00400.31WD403064
PF00400.31WD4083117
PF12894.6ANAPC4_WD40245293

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SpliceosomeTHO complex subunit 3ko03041K12880
RNA transportTHO complex subunit 3ko03013K12880

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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