PH01001245G0180's details annotation
1.Annotation
ICBR annotation: OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed
Blast result AT4G26640 : 1.00E-109
Blast annotation: WRKY family transcription factor family protein
2.Location
Scaffold: PH01001245
Strand: +
| Region | Start | End |
| gene | 107533 | 114338 |
| mRNA | 107533 | 114338 |
| exon | 107533 | 108058 |
| exon | 109088 | 109261 |
| exon | 110667 | 111147 |
| exon | 111560 | 111725 |
| exon | 111805 | 111963 |
| exon | 113650 | 114338 |
| CDS | 107831 | 108058 |
| CDS | 109088 | 109261 |
| CDS | 110667 | 111147 |
| CDS | 111560 | 111725 |
| CDS | 111805 | 111963 |
| CDS | 113650 | 114217 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001207 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity regulation of transcription, DNA-dependent, WRKY Transcription_Regulator(from PlantTFDB) hydroxymethylglutaryl-CoA lyase activity, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | WRKY |
| Transcription_Regulator(from PlantTFDB) | WRKY |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03106.14 | WRKY | 209 | 265 |
| PF03106.14 | WRKY | 383 | 440 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.