PH01001246G0330's details annotation
1.Annotation
ICBR annotation: SET domain-containing protein, putative, expressed
Blast result AT3G07670 : 1.60E-93
Blast annotation: Rubisco methyltransferase family protein
2.Location
Scaffold: PH01001246
Strand: +
| Region | Start | End |
| gene | 205806 | 210159 |
| mRNA | 205806 | 210159 |
| exon | 205806 | 205912 |
| exon | 206022 | 206075 |
| exon | 206236 | 206307 |
| exon | 206477 | 206557 |
| exon | 207795 | 207967 |
| exon | 208539 | 208641 |
| exon | 208752 | 208883 |
| exon | 209317 | 210159 |
| CDS | 205898 | 205912 |
| CDS | 206022 | 206075 |
| CDS | 206236 | 206307 |
| CDS | 206477 | 206557 |
| CDS | 207795 | 207967 |
| CDS | 208539 | 208641 |
| CDS | 208752 | 208883 |
| CDS | 209317 | 209403 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000565 | Ubiquinone_and_other_terpenoid-quinone_biosynthesis leucyl-tRNA aminoacylation, RLK-Pelle_LRR-Xa (from iTAK) GT2 GlycosylTransferases Aminoacyl-tRNA_biosynthesis SET Transcription_Regulator(from iTAK) prenyltransferase activity, leucine-tRNA ligase activity, aminoacyl-tRNA_editing_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00856.27 | SET | 28 | 80 |
| PF09273.10 | Rubis-subs-bind | 113 | 210 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.