PH01001250G0420's details annotation
1.Annotation
ICBR annotation: glycosyl transferase, group 1 domain containing protein, expressed
Blast result AT1G78800 : 2.10E-88
Blast annotation: UDP-Glycosyltransferase superfamily protein
2.Location
Scaffold: PH01001250
Strand: -
| Region | Start | End |
| gene | 269396 | 273640 |
| mRNA | 269396 | 273640 |
| exon | 269396 | 269999 |
| exon | 270096 | 270262 |
| exon | 270388 | 270524 |
| exon | 270665 | 270812 |
| exon | 270937 | 271042 |
| exon | 271122 | 271315 |
| exon | 271611 | 271727 |
| exon | 272236 | 273640 |
| CDS | 269706 | 269999 |
| CDS | 270096 | 270262 |
| CDS | 270388 | 270524 |
| CDS | 270665 | 270812 |
| CDS | 270937 | 271042 |
| CDS | 271122 | 271315 |
| CDS | 271611 | 271727 |
| CDS | 272236 | 272332 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001034 | STE_STE20-YSK (from iTAK) protein phosphatase type 2A complex, glycolipid_6-alpha-mannosyltransferase_activity GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity C3H Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001112 | protein phosphatase type 2A complex, GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity glycolipid_6-alpha-mannosyltransferase_activity C3H Transcription_Regulator(from PlantTFDB) protein phosphatase type 2A regulator activity, mRNA_surveillance_pathway Proteasome protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13439.5 | Glyco_transf_4 | 32 | 212 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004378 | GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity |
| GO:0033164 | glycolipid 6-alpha-mannosyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.