PH01001256G0220's details annotation
1.Annotation
ICBR annotation: transcriptional corepressor LEUNIG, putative, expressed
Blast result AT4G32551 : 4.20E-38
Blast annotation: LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
2.Location
Scaffold: PH01001256
Strand: -
| Region | Start | End |
| gene | 180544 | 188011 |
| mRNA | 180544 | 188011 |
| exon | 180544 | 180885 |
| exon | 181232 | 181459 |
| exon | 182240 | 182539 |
| exon | 183458 | 183507 |
| exon | 183685 | 183760 |
| exon | 183886 | 183973 |
| exon | 184738 | 184823 |
| exon | 185976 | 186085 |
| exon | 186209 | 186306 |
| exon | 187646 | 188011 |
| CDS | 180835 | 180885 |
| CDS | 181232 | 181459 |
| CDS | 182240 | 182539 |
| CDS | 183458 | 183507 |
| CDS | 183685 | 183760 |
| CDS | 183886 | 183973 |
| CDS | 184738 | 184823 |
| CDS | 185976 | 186085 |
| CDS | 186209 | 186306 |
| CDS | 187646 | 187677 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | LUG |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08513.10 | LisH | 10 | 35 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003697 | single-stranded DNA binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.