Annotation of co-expression genes

PH01001258G0260's details annotation

1.Annotation

ICBR annotation: glycosyl hydrolases family 16, putative, expressed

Blast result AT5G57550 : 2.00E-114
Blast annotation: xyloglucan endotransglucosylase/hydrolase 25

2.Location

Scaffold: PH01001258
Strand: +

RegionStartEnd
gene147187148571
mRNA147187148571
exon147187148571
CDS148086148487

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000086RAV Transcription_Regulator(from PlantTFDB)
AP2/ERF-RAV Transcription_Regulator(from iTAK)
GH16 Glycoside_Hydrolases
cell wall,
apoplast,
xyloglucan:xyloglucosyl transferase activity,
drug transmembrane transporter activity,
antiporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH16

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00722.20Glyco_hydro_1624203
PF06955.11XET_C245288

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005618cell wall
GO:0005975carbohydrate metabolic process
GO:0006073cellular glucan metabolic process
GO:0016762xyloglucan:xyloglucosyl transferase activity
GO:0048046apoplast

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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