PH01001258G0290's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolases family 16, putative
Blast result AT4G25810 : 5.50E-88
Blast annotation: xyloglucan endotransglycosylase 6
2.Location
Scaffold: PH01001258
Strand: -
| Region | Start | End |
| gene | 180933 | 186575 |
| mRNA | 180933 | 186575 |
| exon | 180933 | 181402 |
| exon | 182618 | 182811 |
| exon | 185492 | 186575 |
| CDS | 180997 | 181402 |
| CDS | 182618 | 182811 |
| CDS | 185492 | 185776 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH16 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00722.20 | Glyco_hydro_16 | 32 | 211 |
| PF06955.11 | XET_C | 243 | 287 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006073 | cellular glucan metabolic process |
| GO:0016762 | xyloglucan:xyloglucosyl transferase activity |
| GO:0048046 | apoplast |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.