PH01001259G0190's details annotation
1.Annotation
ICBR annotation: palmitoyl-protein thioesterase 1 precursor, putative, expressed
Blast result AT3G60340 : 2.60E-67
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01001259
Strand: -
| Region | Start | End |
| gene | 158893 | 165335 |
| mRNA | 158893 | 165335 |
| exon | 158893 | 159031 |
| exon | 159464 | 159586 |
| exon | 161906 | 161944 |
| exon | 162058 | 162123 |
| exon | 162615 | 162677 |
| exon | 163003 | 163053 |
| exon | 163463 | 163516 |
| exon | 165056 | 165144 |
| exon | 165233 | 165335 |
| CDS | 159023 | 159031 |
| CDS | 159464 | 159586 |
| CDS | 161906 | 161944 |
| CDS | 162058 | 162123 |
| CDS | 162615 | 162677 |
| CDS | 163003 | 163053 |
| CDS | 163463 | 163516 |
| CDS | 165056 | 165144 |
| CDS | 165233 | 165323 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02089.14 | Palm_thioest | 58 | 194 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006464 | cellular protein modification process |
| GO:0008474 | palmitoyl-(protein) hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.