PH01001261G0560's details annotation
1.Annotation
ICBR annotation: hyaluronan/mRNA binding family domain containing protein, expressed
Blast result AT4G16830 : 5.10E-39
Blast annotation: Hyaluronan / mRNA binding family
2.Location
Scaffold: PH01001261
Strand: +
| Region | Start | End |
| gene | 386717 | 393173 |
| mRNA | 386717 | 393173 |
| exon | 386717 | 387223 |
| exon | 387613 | 388027 |
| exon | 388128 | 388272 |
| exon | 391736 | 391894 |
| exon | 391972 | 392028 |
| exon | 392111 | 393173 |
| CDS | 387055 | 387223 |
| CDS | 387613 | 388027 |
| CDS | 388128 | 388272 |
| CDS | 391736 | 391894 |
| CDS | 391972 | 392028 |
| CDS | 392111 | 392296 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000537 | Ribosome eukaryotic translation initiation factor 3 complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09598.9 | Stm1_N | 1 | 70 |
| PF04774.14 | HABP4_PAI-RBP1 | 159 | 271 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.