Annotation of co-expression genes

PH01001266G0290's details annotation

1.Annotation

ICBR annotation: aldehyde dehydrogenase, putative, expressed

Blast result AT1G74920 : 3.00E-133
Blast annotation: aldehyde dehydrogenase 10A8

2.Location

Scaffold: PH01001266
Strand: -

RegionStartEnd
gene173625177850
mRNA173625177850
exon173625173655
exon173924174000
exon174646174712
exon174889174954
exon175046175169
exon175246175338
exon175896176044
exon176126176206
exon177152177294
exon177348177850
CDS173644173655
CDS173924174000
CDS174646174712
CDS174889174954
CDS175046175169
CDS175246175338
CDS175896176044
CDS176126176206
CDS177152177294
CDS177348177498

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00171.21Aldedh49318

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
308 Glycine, serine and threonine metabolismbetaine-aldehyde dehydrogenase [EC:1.2.1.8]K00130

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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