PH01001268G0330's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G44040 : 1.70E-19
Blast annotation: -
2.Location
Scaffold: PH01001268
Strand: -
| Region | Start | End |
| gene | 257084 | 259934 |
| mRNA | 257084 | 259934 |
| exon | 257084 | 257404 |
| exon | 257687 | 258713 |
| exon | 258812 | 258903 |
| exon | 259012 | 259934 |
| CDS | 257372 | 257404 |
| CDS | 257687 | 258713 |
| CDS | 258812 | 258903 |
| CDS | 259012 | 259104 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000261 | protein_heterodimerization_activity NF-YB Transcription_Regulator(from PlantTFDB) nucleosome assembly, GRAS Transcription_Regulator(from PlantTFDB) nucleosome, Base_excision_repair Nucleotide_excision_repair DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.