Annotation of co-expression genes

PH01001272G0030's details annotation

1.Annotation

ICBR annotation: alpha-amylase precursor, putative, expressed

Blast result AT4G25000 : 6.00E-145
Blast annotation: alpha-amylase-like

2.Location

Scaffold: PH01001272
Strand: -

RegionStartEnd
gene1213714498
mRNA1213714498
exon1213712525
exon1260913420
exon1408414216
exon1434514498
CDS1225012525
CDS1260913420
CDS1408414216
CDS1434514422

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000093NAC Transcription_Regulator(from PlantTFDB)
GH79 Glycoside_Hydrolases
DBB Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00128.23Alpha-amylase46208
PF07821.11Alpha-amyl_C2364422

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismalpha-amylase [EC:3.2.1.1]ko00500K01176

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004556alpha-amylase activity
GO:0005509calcium ion binding
GO:0005975carbohydrate metabolic process
GO:0043169cation binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.