PH01001272G0140's details annotation
1.Annotation
ICBR annotation: coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed
Blast result AT2G16460 : 4.20E-86
Blast annotation: Protein of unknown function (DUF1640)
2.Location
Scaffold: PH01001272
Strand: +
| Region | Start | End |
| gene | 72961 | 76398 |
| mRNA | 72961 | 76398 |
| exon | 72961 | 73634 |
| exon | 73767 | 73898 |
| exon | 74002 | 74061 |
| exon | 74659 | 74735 |
| exon | 74818 | 74874 |
| exon | 75790 | 75856 |
| exon | 75941 | 76398 |
| CDS | 73479 | 73634 |
| CDS | 73767 | 73898 |
| CDS | 74002 | 74061 |
| CDS | 74659 | 74735 |
| CDS | 74818 | 74874 |
| CDS | 75790 | 75856 |
| CDS | 75941 | 76060 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07798.10 | DUF1640 | 47 | 220 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.