PH01001272G0410's details annotation
1.Annotation
ICBR annotation: ubiquitin interaction motif family protein, expressed
Blast result AT4G11860 : 3.00E-129
Blast annotation: Protein of unknown function (DUF544)
2.Location
Scaffold: PH01001272
Strand: +
| Region | Start | End |
| gene | 341503 | 348140 |
| mRNA | 341503 | 348140 |
| exon | 341503 | 342011 |
| exon | 342149 | 342267 |
| exon | 342351 | 342457 |
| exon | 342556 | 342643 |
| exon | 344528 | 345566 |
| exon | 345674 | 345728 |
| exon | 345816 | 345897 |
| exon | 345979 | 346059 |
| exon | 346146 | 346250 |
| exon | 346332 | 346381 |
| exon | 347121 | 347283 |
| exon | 347521 | 348140 |
| CDS | 341840 | 342011 |
| CDS | 342149 | 342267 |
| CDS | 342351 | 342457 |
| CDS | 342556 | 342643 |
| CDS | 344528 | 345566 |
| CDS | 345674 | 345728 |
| CDS | 345816 | 345897 |
| CDS | 345979 | 346059 |
| CDS | 346146 | 346250 |
| CDS | 346332 | 346381 |
| CDS | 347121 | 347283 |
| CDS | 347521 | 347613 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001610 | Sphingolipid_metabolism alpha-Linolenic_acid_metabolism carboxylic acid metabolic process, catalytic activity, carboxy-lyase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04424.12 | MINDY_DUB | 58 | 179 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.