Annotation of co-expression genes

PH01001272G0420's details annotation

1.Annotation

ICBR annotation: acyltransferase, putative, expressed

Blast result AT2G45670 : 4.00E-154
Blast annotation: calcineurin B subunit-related

2.Location

Scaffold: PH01001272
Strand: -

RegionStartEnd
gene348338354068
mRNA348338354068
exon348338348999
exon349079349237
exon349323349373
exon349454349520
exon349709349779
exon350072350116
exon350295350390
exon350493350561
exon350669350732
exon350811350974
exon351425351484
exon351577351757
exon353110354068
CDS348841348999
CDS349079349237
CDS349323349373
CDS349454349520
CDS349709349779
CDS350072350116
CDS350295350390
CDS350493350561
CDS350669350732
CDS350811350974
CDS351425351484
CDS351577351757
CDS353110353582

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01553.20Acyltransferase170271

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerophospholipid metabolismlysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase[EC:2.3.1.23;EC:2.3.1.67]ko00564K13510
Ether lipid metabolismlysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase[EC:2.3.1.23;EC:2.3.1.67]ko00565K13510

10.Gene Ontology

GO AccessionGO Annotation
GO:0005509calcium ion binding
GO:0008152metabolic process
GO:0016746transferase activity, transferring acyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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