Annotation of co-expression genes

PH01001274G0290's details annotation

1.Annotation

ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed

Blast result AT1G57820 : 2.00E-178
Blast annotation: Zinc finger (C3HC4-type RING finger) family protein

2.Location

Scaffold: PH01001274
Strand: +

RegionStartEnd
gene169020177419
mRNA169020177419
exon169020170593
exon171467171510
exon172159172294
exon172418172455
exon172858172915
exon173481173965
exon174107174232
exon174518174617
exon174755174819
exon174916175018
exon175101175239
exon175350175564
exon175641177419
CDS170333170593
CDS171467171510
CDS172159172294
CDS172418172455
CDS172858172915
CDS173481173965
CDS174107174232
CDS174518174617
CDS174755174819
CDS174916175018
CDS175101175239
CDS175350175564
CDS175641176378

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00097.24zf-C3HC4177205
PF02182.16SAD_SRA299431
PF13445.5zf-RING_UBOX522557

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0042393histone binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.