Annotation of co-expression genes

PH01001274G0460's details annotation

1.Annotation

ICBR annotation: ankyrin repeat family protein, putative, expressed

Blast result AT3G04710 : 2.00E-152
Blast annotation: ankyrin repeat family protein

2.Location

Scaffold: PH01001274
Strand: -

RegionStartEnd
gene279236284502
mRNA279236284502
exon279236279752
exon279878279957
exon280067280237
exon280434280535
exon280635280697
exon281500281625
exon281993282027
exon282714282845
exon283234283290
exon283434283565
exon283678283851
exon284203284502
CDS279692279752
CDS279878279957
CDS280067280237
CDS280434280535
CDS280635280697
CDS281500281625
CDS281993282027
CDS282714282845
CDS283234283290
CDS283434283565
CDS283678283851
CDS284203284236

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000445Spliceosome
nucleic acid binding,
nucleotide binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12796.6Ank_221119
PF12796.6Ank_2124184
PF12796.6Ank_2194274
PF13431.5TPR_17355388

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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