PH01001275G0490's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat domain containing protein, expressed
Blast result AT4G37460 : 1.40E-67
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01001275
Strand: -
| Region | Start | End |
| gene | 350819 | 355541 |
| mRNA | 350819 | 355541 |
| exon | 350819 | 351020 |
| exon | 351330 | 351431 |
| exon | 351513 | 351557 |
| exon | 351891 | 352498 |
| exon | 354627 | 354736 |
| exon | 354850 | 355541 |
| CDS | 350949 | 351020 |
| CDS | 351330 | 351431 |
| CDS | 351513 | 351557 |
| CDS | 351891 | 352498 |
| CDS | 354627 | 354736 |
| CDS | 354850 | 354965 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001267 | sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity, protein binding, myosin complex, motor activity, pentose-phosphate shunt, RNA_polymerase transcription, DNA-dependent, Pyrimidine_metabolism Purine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13432.5 | TPR_16 | 273 | 329 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.