PH01001281G0430's details annotation
1.Annotation
ICBR annotation: dihydropyrimidinase, putative, expressed
Blast result AT5G12200 : 0.00E+00
Blast annotation: pyrimidine 2
2.Location
Scaffold: PH01001281
Strand: +
| Region | Start | End |
| gene | 236118 | 249424 |
| mRNA | 236118 | 249424 |
| exon | 236118 | 236953 |
| exon | 237025 | 237195 |
| exon | 238473 | 238872 |
| exon | 238994 | 239121 |
| exon | 239299 | 239383 |
| exon | 239699 | 239775 |
| exon | 239971 | 240180 |
| exon | 240241 | 240336 |
| exon | 241516 | 241584 |
| exon | 242490 | 242999 |
| exon | 244303 | 244711 |
| exon | 244915 | 245126 |
| exon | 245299 | 245419 |
| exon | 245686 | 245773 |
| exon | 245846 | 245924 |
| exon | 246103 | 246205 |
| exon | 246317 | 246357 |
| exon | 246487 | 246539 |
| exon | 246623 | 246779 |
| exon | 246860 | 247043 |
| exon | 248523 | 249424 |
| CDS | 236873 | 236953 |
| CDS | 237025 | 237195 |
| CDS | 238473 | 238872 |
| CDS | 238994 | 239121 |
| CDS | 239299 | 239383 |
| CDS | 239699 | 239775 |
| CDS | 239971 | 240180 |
| CDS | 240241 | 240336 |
| CDS | 241516 | 241584 |
| CDS | 242490 | 242999 |
| CDS | 244303 | 244711 |
| CDS | 244915 | 245126 |
| CDS | 245299 | 245419 |
| CDS | 245686 | 245773 |
| CDS | 245846 | 245924 |
| CDS | 246103 | 246205 |
| CDS | 246317 | 246357 |
| CDS | 246487 | 246539 |
| CDS | 246623 | 246779 |
| CDS | 246860 | 247043 |
| CDS | 248523 | 249343 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01979.19 | Amidohydro_1 | 656 | 1043 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005737 | cytoplasm |
| GO:0006208 | pyrimidine nucleobase catabolic process |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
| GO:0016812 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.