PH01001286G0160's details annotation
1.Annotation
ICBR annotation: cyclin, putative, expressed
Blast result AT1G70210 : 4.20E-65
Blast annotation: CYCLIN D1;1
2.Location
Scaffold: PH01001286
Strand: +
| Region | Start | End |
| gene | 99918 | 107571 |
| mRNA | 99918 | 107571 |
| exon | 99918 | 101658 |
| exon | 102190 | 102276 |
| exon | 105616 | 105711 |
| exon | 105933 | 106134 |
| exon | 106222 | 106352 |
| exon | 106457 | 106525 |
| exon | 107362 | 107571 |
| CDS | 101338 | 101658 |
| CDS | 102190 | 102276 |
| CDS | 105616 | 105711 |
| CDS | 105933 | 106134 |
| CDS | 106222 | 106352 |
| CDS | 106457 | 106525 |
| CDS | 107362 | 107442 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 68 | 196 |
| PF02984.18 | Cyclin_C | 199 | 299 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0005634 | nucleus |
| GO:0019901 | protein kinase binding |
| GO:0051726 | regulation of cell cycle |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.